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haplotyper.1.0.LINUX.tar
- 利用Partition-Ligation algorithm计算生物SNP的单倍型频率-use Partition - Ligation algorithm to calculate the SNP haplotype frequencies
snp
- 通过计算P-value评价SNP组合模型，从而找出复杂疾病原因-By calculating the P-value assessment of SNP combination model, in order to identify causes of complex diseases
MFP_beta91
- 这是一个处理affy mitochip v2的芯片封装套件。它将提供SNP的电话，来电异质性，以及mitochip数据质量评估。最小样本数为20或以上的无偏产生的结果。-This is a wrapper suite for processing affy mitochip v2 chip. It will provide snp calls, heteroplasmy calls, as well as quality evaluation for mitochip data. MIn sam
viterbiaEM
- 1.用隐马尔科夫模型（HMM）模拟肿瘤细胞整个染色体的拷贝数（CN）变异。并用viteri算法得到最可能的（CN）状态转移序列； 2.使用baum welch算法根据所给序列数据和初始状态转移矩阵，重新估算状态转移矩阵。-HMM, Hidden Markov, baulm welch, viterbi, SNP-array
samtools-1.3.1
- Samtools is a suite of programs for interacting with high-throughput sequencing data. It consists of three separate repositories: SamtoolsReading/writing/editing/indexing/viewing SAM/BAM/CRAM format BCFtoolsReading/writing BCF2/VCF/gVCF files and c
cal_epsilon_miu_lyra
- 从cst中导出snp格式文件，读取到matlab中，提取S参数，运算得到单元结构的等效介电常数和磁导率。(matlab, cst, calculation, snp, original, no error correction)